Eide DJ~Harper JF, 2005

Pubmed ID 16168084
Title Characterization of the yeast ionome: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae.
Authors David J Eide, Suzanne Clark, T Murlidharan Nair, Mathias Gehl, Michael Gribskov, Mary Lou Guerinot, Jeffrey F Harper
Abstract Nutrient minerals are essential yet potentially toxic, and homeostatic mechanisms are required to regulate their intracellular levels. We describe here a genome-wide screen for genes involved in the homeostasis of minerals in Saccharomyces cerevisiae. Using inductively coupled plasma-atomic emission spectroscopy (ICP-AES), we assayed 4,385 mutant strains for the accumulation of 13 elements (calcium, cobalt, copper, iron, potassium, magnesium, manganese, nickel, phosphorus, selenium, sodium, sulfur, and zinc). We refer to the resulting accumulation profile as the yeast 'ionome'.
Citation Genome Biol. 2005; 6:R77

Datasets

Download the list of datasets
Papers Phenotype Conditions Collection Tested mutants Data Details
Eide DJ~Harper JF, 2005 abundance of calcium YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of cobalt YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of copper YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of iron YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of magnesium YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of manganese YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of nickel YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of phosphorus YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of potassium YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of selenium YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of sodium YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of sulphur YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits
Eide DJ~Harper JF, 2005 abundance of zinc YPD + mineral supplement stock [standard] hom 4,380 Quantitative only for hits

Curation history

July 20, 2016 Tested strains requested.
July 20, 2016 Tested strains to load.
July 20, 2016 Data to request.
July 21, 2016 Data requested.
Aug. 16, 2016 Data requested.
Sept. 20, 2016 Data not available.
Sept. 20, 2016 Data to load.
Oct. 6, 2016 Tested strains loaded.
Oct. 6, 2016 Data loaded.