Yu D~Vitek O, 2011

Pubmed ID 21685046
Title Noise reduction in genome-wide perturbation screens using linear mixed-effect models.
Authors Danni Yu, John Danku, Ivan Baxter, Sungjin Kim, Olena K Vatamaniuk, David E Salt, Olga Vitek
Abstract High-throughput perturbation screens measure the phenotypes of thousands of biological samples under various conditions. The phenotypes measured in the screens are subject to substantial biological and technical variation. At the same time, in order to enable high throughput, it is often impossible to include a large number of replicates, and to randomize their order throughout the screens. Distinguishing true changes in the phenotype from stochastic variation in such experimental designs is extremely challenging, and requires adequate statistical methodology.
Citation Bioinformatics 2011; 27:2173-80
Notes Related study: http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-623

Datasets

Download the list of datasets
Papers Phenotype Conditions Collection Tested mutants Data Details
Yu D~Vitek O, 2011 abundance of calcium minimal + element supplement [standard] hap a 4,878 Quantitative
Yu D~Vitek O, 2011 abundance of cadmium minimal + element supplement [standard] hap a 4,878 Quantitative
Yu D~Vitek O, 2011 abundance of cobalt minimal + element supplement [standard] hap a 4,878 Quantitative
Yu D~Vitek O, 2011 abundance of copper minimal + element supplement [standard] hap a 4,878 Quantitative
Yu D~Vitek O, 2011 abundance of iron minimal + element supplement [standard] hap a 4,656 Quantitative
Yu D~Vitek O, 2011 abundance of potassium minimal + element supplement [standard] hap a 4,656 Quantitative
Yu D~Vitek O, 2011 abundance of magnesium minimal + element supplement [standard] hap a 4,656 Quantitative
Yu D~Vitek O, 2011 abundance of manganese minimal + element supplement [standard] hap a 4,656 Quantitative
Yu D~Vitek O, 2011 abundance of molybdenum minimal + element supplement [standard] hap a 4,581 Quantitative
Yu D~Vitek O, 2011 abundance of sodium minimal + element supplement [standard] hap a 4,580 Quantitative
Yu D~Vitek O, 2011 abundance of nickel minimal + element supplement [standard] hap a 4,568 Quantitative
Yu D~Vitek O, 2011 abundance of phosphorus minimal + element supplement [standard] hap a 4,568 Quantitative
Yu D~Vitek O, 2011 abundance of sulphur minimal + element supplement [standard] hap a 4,568 Quantitative
Yu D~Vitek O, 2011 abundance of zinc minimal + element supplement [standard] hap a 4,568 Quantitative
Yu D~Vitek O, 2011 abundance of calcium minimal + element supplement [standard] het 1,127 Quantitative
Yu D~Vitek O, 2011 abundance of cadmium minimal + element supplement [standard] het 1,127 Quantitative
Yu D~Vitek O, 2011 abundance of cobalt minimal + element supplement [standard] het 1,127 Quantitative
Yu D~Vitek O, 2011 abundance of copper minimal + element supplement [standard] het 1,127 Quantitative
Yu D~Vitek O, 2011 abundance of iron minimal + element supplement [standard] het 1,124 Quantitative
Yu D~Vitek O, 2011 abundance of potassium minimal + element supplement [standard] het 1,124 Quantitative
Yu D~Vitek O, 2011 abundance of magnesium minimal + element supplement [standard] het 1,124 Quantitative
Yu D~Vitek O, 2011 abundance of manganese minimal + element supplement [standard] het 1,124 Quantitative
Yu D~Vitek O, 2011 abundance of molybdenum minimal + element supplement [standard] het 1,121 Quantitative
Yu D~Vitek O, 2011 abundance of sodium minimal + element supplement [standard] het 1,121 Quantitative
Yu D~Vitek O, 2011 abundance of nickel minimal + element supplement [standard] het 1,121 Quantitative
Yu D~Vitek O, 2011 abundance of phosphorus minimal + element supplement [standard] het 1,121 Quantitative
Yu D~Vitek O, 2011 abundance of sulphur minimal + element supplement [standard] het 1,121 Quantitative
Yu D~Vitek O, 2011 abundance of zinc minimal + element supplement [standard] het 1,121 Quantitative

Curation history

July 20, 2016 Tested strains to load.
July 20, 2016 Data to load.
July 21, 2016 Tested strains loaded.
July 21, 2016 Data loaded.