Zhao L~Liu B, 2016

Pubmed ID 27440388
Title A genome-wide imaging-based screening to identify genes involved in synphilin-1 inclusion formation in Saccharomyces cerevisiae.
Authors Lei Zhao, Qian Yang, Ju Zheng, Xuefeng Zhu, Xinxin Hao, Jia Song, Tom Lebacq, Vanessa Franssens, Joris Winderickx, Thomas Nystrom, Beidong Liu
Abstract Synphilin-1 is a major component of Parkinson's disease (PD) inclusion bodies implicated in PD pathogenesis. However, the machinery controlling synphilin-1 inclusion formation remains unclear. Here, we investigated synphilin-1 inclusion formation using a systematic genome-wide, high-content imaging based screening approach (HCI) in the yeast Saccharomyces cerevisiae. By combining with a secondary screening for mutants showing significant changes on fluorescence signal intensity, we filtered out hits that significantly decreased the expression level of synphilin-1. We found 133 yeast genes that didn't affect synphilin-1 expression but that were required for the formation of synphilin-1 inclusions. Functional enrichment and physical interaction network analysis revealed these genes to encode for functions involved in cytoskeleton organization, histone modification, sister chromatid segregation, glycolipid biosynthetic process, DNA repair and replication. All hits were confirmed by conventional microscopy. Complementation assays were performed with a selected group of mutants, results indicated that the observed phenotypic changes in synphilin-1 inclusion formation were directly caused by the loss of corresponding genes of the deletion mutants. Further growth assays of these mutants showed a significant synthetic sick effect upon synphilin-1 expression, which supports the hypothesis that matured inclusions represent an end stage of several events meant to protect cells against the synphilin-1 cytotoxicity.
Citation Sci Rep 2016; 6:30134


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Papers Phenotype Conditions Collection Tested mutants Data Details
Zhao L~Liu B, 2016 protein aggregates (synphilin-1) standard [standard] hap a 4,221 Quantitative

Curation history

July 27, 2016 Tested strains requested.
July 27, 2016 Data requested.
Aug. 2, 2016 Tested strains to load.
Aug. 2, 2016 Data to load.
Sept. 12, 2016 Tested strains loaded.
Sept. 12, 2016 Data loaded.