Delneri D~Oliver SG, 2008

Pubmed ID 18157128
Title Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.
Authors Daniela Delneri, David C Hoyle, Konstantinos Gkargkas, Emma J M Cross, Bharat Rash, Leo Zeef, Hui-Sun Leong, Hazel M Davey, Andrew Hayes, Douglas B Kell, Gareth W Griffith, Stephen G Oliver
Abstract Using competition experiments in continuous cultures grown in different nutrient environments (glucose limited, ammonium limited, phosphate limited and white grape juice), we identified genes that show haploinsufficiency phenotypes (reduced growth rate when hemizygous) or haploproficiency phenotypes (increased growth rate when hemizygous). Haploproficient genes (815, 1,194, 733 and 654 in glucose-limited, ammonium-limited, phosphate-limited and white grape juice environments, respectively) frequently show that phenotype in a specific environmental context. For instance, genes encoding components of the ubiquitination pathway or the proteasome show haploproficiency in nitrogen-limited conditions where protein conservation may be beneficial. Haploinsufficiency is more likely to be observed in all environments, as is the case with genes determining polar growth of the cell. Haploproficient genes seem randomly distributed in the genome, whereas haploinsufficient genes (685, 765, 1,277 and 217 in glucose-limited, ammonium-limited, phosphate-limited and white grape juice environments, respectively) are over-represented on chromosome III. This chromosome determines a yeast's mating type, and the concentration of haploinsufficient genes there may be a mechanism to prevent its loss.
Citation Nat. Genet. 2008; 40:113-7

Datasets

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Paper Phenotype Condition Medium Collection Tested mutants Data Details
Delneri D~Oliver SG, 2008 growth (relative abundance in pooled culture) glucose limitation het N/A Quantitative only for hits
Delneri D~Oliver SG, 2008 growth (relative abundance in pooled culture) standard grape juice het N/A Quantitative only for hits
Delneri D~Oliver SG, 2008 growth (relative abundance in pooled culture) nitrogen limitation het N/A Quantitative only for hits
Delneri D~Oliver SG, 2008 growth (relative abundance in pooled culture) phosphorus limitation het N/A Quantitative only for hits

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