Hoepfner D~Parker CN, 2012

Pubmed ID 22615293
Title An integrated approach for identification and target validation of antifungal compounds active against Erg11p.
Authors Dominic Hoepfner, Shantanu Karkare, Stephen B Helliwell, Martin Pfeifer, Markus Trunzer, Sophie De Bonnechose, Alfred Zimmerlin, Jianshi Tao, Daryl Richie, Andreas Hofmann, Stefan Reinker, Mathias Frederiksen, N Rao Movva, Jeffrey A Porter, Neil S Ryder, Christian N Parker
Abstract Systemic life-threatening fungal infections represent a significant unmet medical need. Cell-based, phenotypic screening can be an effective means of discovering potential novel antifungal compounds, but it does not address target identification, normally required for compound optimization by medicinal chemistry. Here, we demonstrate a combination of screening, genetic, and biochemical approaches to identify and characterize novel antifungal compounds. We isolated a set of novel non-azole antifungal compounds for which no target or mechanism of action is known, using a screen for inhibition of Saccharomyces cerevisiae proliferation. Haploinsufficiency profiling of these compounds in S. cerevisiae suggests that they target Erg11p, a cytochrome P450 family member, which is the target of azoles. Consistent with this, metabolic profiling in S. cerevisiae revealed a buildup of the metabolic intermediates prior to Erg11p activity, following compound treatment. Further, human cytochrome P450 is also inhibited in in vitro assays by these compounds. We modeled the Erg11p protein based on the human CYP51 crystal structure, and in silico docking of these compounds suggests that they interact with the heme center in a manner similar to that of azoles. Consistent with these docking observations, Candida strains carrying azole-resistant alleles of ERG11 are also resistant to the compounds in this study. Thus, we have identified non-azole Erg11p inhibitors, using a systematic approach for ligand and target characterization.
Citation Antimicrob. Agents Chemother. 2012; 56:4233-40

Datasets

Download the list of datasets
Paper Phenotype Condition Medium Collection Tested mutants Data Details
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 1 [12 uM] hom N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 2 [0.5 uM] hom N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 3 [0.25 uM] hom N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 4 [200 uM] hom N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) voriconazole [1.2 uM] hom N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 1 [12 uM] het N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 2 [0.5 uM] het N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 3 [0.25 uM] het N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) compound 4 [200 uM] het N/A None
Hoepfner D~Parker CN, 2012 growth (pooled culture) voriconazole [1.2 uM] het N/A None

Curation history

Tested strains

Feb. 8, 2019 To request.

Data

Feb. 8, 2019 To request.