Teng X~Hardwick JM, 2013

Pubmed ID 24211263
Title Genome-wide consequences of deleting any single gene.
Authors Xinchen Teng, Margaret Dayhoff-Brannigan, Wen-Chih Cheng, Catherine E Gilbert, Cierra N Sing, Nicola L Diny, Sarah J Wheelan, Maitreya J Dunham, Jef D Boeke, Fernando J Pineda, J Marie Hardwick
Abstract Loss or duplication of chromosome segments can lead to further genomic changes associated with cancer. However, it is not known whether only a select subset of genes is responsible for driving further changes. To determine whether perturbation of any given gene in a genome suffices to drive subsequent genetic changes, we analyzed the yeast knockout collection for secondary mutations of functional consequence. Unlike wild-type, most gene knockout strains were found to have one additional mutant gene affecting nutrient responses and/or heat-stress-induced cell death. Moreover, independent knockouts of the same gene often evolved mutations in the same secondary gene. Genome sequencing identified acquired mutations in several human tumor suppressor homologs. Thus, mutation of any single gene may cause a genomic imbalance, with consequences sufficient to drive adaptive genetic changes. This complicates genetic analyses but is a logical consequence of losing a functional unit originally acquired under pressure during evolution.
Citation Mol. Cell 2013; 52:485-94
Data abstract Deletion collection was screened for overgrowth on low amino acid medium.


Download the list of datasets
Paper Phenotype Condition Medium Collection Tested mutants Data Details
Teng X~Hardwick JM, 2013 growth (spot assay) standard SC hap a ~4,847 Discrete

Curation history


Aug. 3, 2020 Waiting for tested.
Aug. 6, 2020 Ready to load.
Aug. 9, 2020 Loaded.

Tested strains

March 23, 2020 To request.
April 20, 2020 Request sent.
Aug. 3, 2020 Request sent.
Aug. 6, 2020 Request abandoned.